MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-22-v2

Family name COL-NOVEL-22 (all species)
Seed UUCUGUU
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Novel-22-v1 
Orthologues Obi-Novel-22  Ovu-Novel-22 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-22-v1_pre_SRIE01046427.1:101401-101659: 102-158 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGGUAGAUACUUGGCGAUUGGGGUACGUUUUCUGUUGCGCCAAGGGCAUAUUCGUAUUCUCUAUGCUCUGUCGCACCAAGAAGACAUAUCUGUCGCCUCCGCUACAUCACUACCU
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Structure
        10            20        30         40        50        
GGAGGUAGAUACUUGGC----|  UG     C       GU-    CCA        UUCGU 
                     GAU  GGGUA GUUUUCU   UGCG   AGGGCAUA     \
                     CUG  UCUAU CAGAAGA   ACGC   UCUCGUAU     A
UCCAUCACUACAUCGCCUCCG^  --     A       ACC    UG-        CUCUU 
     110       100          90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-22-v2_5p

mirBase accessionNone
Sequence
0- UUUCUGUUGCGCCAAGGGCAUAU -23
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Star sequence

Esc-Novel-22-v2_3p*

mirBase accessionNone
Sequence
34- AUGCUCUGUCGCACCAAGAAGAC -57
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