MirGeneDB ID | Esc-Novel-22-v2 |
Family name |
COL-NOVEL-22 (all species) |
Seed |
UUCUGUU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-22-v1
|
Orthologues |
Obi-Novel-22
Ovu-Novel-22
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-22-v1_pre_SRIE01046427.1:101401-101659: 102-158 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGGUAGAUACUUGGCGAUUGGGGUACGUUUUCUGUUGCGCCAAGGGCAUAUUCGUAUUCUCUAUGCUCUGUCGCACCAAGAAGACAUAUCUGUCGCCUCCGCUACAUCACUACCU
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|
Structure | 10 20 30 40 50
GGAGGUAGAUACUUGGC----| UG C GU- CCA UUCGU
GAU GGGUA GUUUUCU UGCG AGGGCAUA \
CUG UCUAU CAGAAGA ACGC UCUCGUAU A
UCCAUCACUACAUCGCCUCCG^ -- A ACC UG- CUCUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Esc-Novel-22-v2_5p |
mirBase accession | None |
Sequence |
0- UUUCUGUUGCGCCAAGGGCAUAU -23
Get sequence
|
Star sequence |
Esc-Novel-22-v2_3p* |
mirBase accession | None |
Sequence |
34- AUGCUCUGUCGCACCAAGAAGAC -57
Get sequence
|