MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-21

Family name COL-NOVEL-21 (all species)
Seed AUUAGAA
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-21 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-21_pre_SRIE01012948.1:15291-15547: 101-157 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUUCGAUUCCAUUCUGUGAAUACCCAAGUAUUAGAAAGUCGUAAGUGUCAAUCAAUCUAUGUGACACUGGCGACCUUCUAAAACGUGGUUGUUCAACGUUACAACGGAAUCAGCA
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Structure
        10          20        30        40        50        
CGAUUCGAUUCCAUUCUG--|     C   A  A      A     A       AUCAA 
                    UGAAUA CCA GU UUAGAA GUCGU AGUGUCA     \
                    ACUUGU GGU CA AAUCUU CAGCG UCACAGU     U
ACGACUAAGGCAACAUUGCA^     U   G  A      C     G       GUAUC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-21_5p

mirBase accessionNone
Sequence
0- UAUUAGAAAGUCGUAAGUGUCA -22
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Star sequence

Esc-Novel-21_3p*

mirBase accessionNone
Sequence
35- ACACUGGCGACCUUCUAAAACG -57
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