MirGeneDB ID | Esc-Novel-21 |
Family name |
COL-NOVEL-21 (all species) |
Seed |
AUUAGAA |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Obi-Novel-21
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-21_pre_SRIE01012948.1:15291-15547: 101-157 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGAUUCGAUUCCAUUCUGUGAAUACCCAAGUAUUAGAAAGUCGUAAGUGUCAAUCAAUCUAUGUGACACUGGCGACCUUCUAAAACGUGGUUGUUCAACGUUACAACGGAAUCAGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGAUUCGAUUCCAUUCUG--| C A A A A AUCAA
UGAAUA CCA GU UUAGAA GUCGU AGUGUCA \
ACUUGU GGU CA AAUCUU CAGCG UCACAGU U
ACGACUAAGGCAACAUUGCA^ U G A C G GUAUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Esc-Novel-21_5p |
mirBase accession | None |
Sequence |
0- UAUUAGAAAGUCGUAAGUGUCA -22
Get sequence
|
Star sequence |
Esc-Novel-21_3p* |
mirBase accession | None |
Sequence |
35- ACACUGGCGACCUUCUAAAACG -57
Get sequence
|