| MirGeneDB ID | Esc-Novel-20 |
|---|
| Family name |
COL-NOVEL-20 (all species) |
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| Seed |
UCGGGAG |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Novel-20-P1
Obi-Novel-20-P2
Ovu-Novel-20-P1
Ovu-Novel-20-P2
|
|---|
| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-20_pre_SRIE01046960.1:680095-680238: 44-101 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAUAUAUGUAUAUAUAUUAGCAUGCACGCACAUCUGACUUUCCUCCCGCGCAGCAUAUAAGCGAUUCUCGGGAGACAAGUGAGAUGUCGUGCAUUUGCUGGACAUGCAUCGAAAAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUAUAUGUAUAUAUAU- --| C G UC CGCAGCAUA
UAGCA UGCACG ACAUCU ACUU CUCCCG U
GUCGU ACGUGC UGUAGA UGAA GAGGGC A
AUAAAAAGCUACGUACAG UU^ - G CA UCUUAGCGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-20_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCUGACUUUCCUCCCGCGCA -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-20_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CUCGGGAGACAAGUGAGAUGUC -58
Get sequence
|
|---|
