MirGeneDB ID | Esc-Novel-17-v2 |
Family name |
COL-NOVEL-17 (all species) |
Seed |
AAGGGUU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-17-v1
|
Orthologues |
Obi-Novel-17
Ovu-Novel-17
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-17-v1_pre_SRIE01005051.1:1594940-1595083: 44-101 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGACGUCAUCACUUGAGGGUUUUGUUACUGAGCAAGACAGACUUACUUUUGUGACUUUUAGCACCAAAGGGUUUCUGUGUUGUUCUCAGUUGCGGCUCUCUUCUCAUCUCAACAAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGACGUCAUCACUUGAG-- UU U --| G CUUA UGACUU
GG UUGU ACUGAG CAA ACAGA CUUUUG \
UC GGCG UGACUC GUU UGUCU GGAAAC U
AAAAACAACUCUACUCUUC UC U UU^ G UUG- CACGAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-17-v2_5p* |
mirBase accession | None |
Sequence |
0- AGCAAGACAGACUUACUUUUG -21
Get sequence
|
Mature sequence |
Esc-Novel-17-v2_3p |
mirBase accession | None |
Sequence |
35- AAAGGGUUUCUGUGUUGUUCUCA -58
Get sequence
|