MirGeneDB ID | Efe-Mir-2-o49 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-2-o44
Efe-Mir-2-o45
Efe-Mir-2-o46
Efe-Mir-2-o47
Efe-Mir-2-o48
Efe-Mir-2-o50
|
Orthologues |
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.159362: 1072-1126 [-]
|
Precursor (pre-Mir +30nt flank) |
NNACCAUGUUAUGGGGAGCAGCUGAAGGCCUGGUCAAAGAUUCUGUGAAAUGCUACUGAAUCAUAUCACAGCCGCUUUGACUGGUUCUUAACUGCAUCACAUCUUCACUUUCUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
NNACCAUGUUAUGGGGA---| C AG U AUU A CUAC
GCAG UGA GCC GGUCAAAG CUGUGA AUG \
CGUC AUU UGG UCAGUUUC GACACU UAC U
CGUCUUUCACUUCUACACUA^ A CU - GCC A UAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-2-o49_5p* |
mirBase accession | None |
Sequence |
0- UGGUCAAAGAUUCUGUGAAAUG -22
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|
Mature sequence |
Efe-Mir-2-o49_3p |
mirBase accession | None |
Sequence |
33- UAUCACAGCCGCUUUGACUGGU -55
Get sequence
|