| MirGeneDB ID | Efe-Mir-2-o46 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-2-o44
Efe-Mir-2-o45
Efe-Mir-2-o47
Efe-Mir-2-o48
Efe-Mir-2-o49
Efe-Mir-2-o50
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| Orthologues |
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Efe_combined) |
Efet.01.155957: 2068-2132 [+]
|
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Precursor
(pre-Mir +30nt flank) |
UGGUUACAUUCCAAAAUUCUGUUGAUGCGACAGUCCAGGUGGUUGAGAUGCGUUUCUUUUUGAAAAUGGUCGUAUCACAGCCUGCUUGGAUUAUGGCAGCAAUAGACAAGCAGCACAGCUUCUAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGGUUACAUUCCAAAAU-- A GAC -| A UUUCUUUU
UCUGUUG UGC AGUCCAGGU GGUUG GAUGCG U
AGAUAAC ACG UUAGGUUCG CCGAC CUAUGC G
AAUCUUCGACACGACGAAC G GUA U^ A UGGUAAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-2-o46_5p* |
| mirBase accession | None |
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| Sequence |
0- CAGUCCAGGUGGUUGAGAUGCG -22
Get sequence
|
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| Mature sequence |
Efe-Mir-2-o46_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UAUCACAGCCUGCUUGGAUUAUG -65
Get sequence
|
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