MirGeneDB

MirGeneDB ID

Dre-Mir-124-P1-v1

Family name MIR-124 (all species)
Seed AAGGCAC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-124-2
Paralogues Dre-Mir-124-P1-v2  Dre-Mir-124-P2a-v1  Dre-Mir-124-P2a-v2  Dre-Mir-124-P2b-v1  Dre-Mir-124-P2b-v2  Dre-Mir-124-P3a-v1  Dre-Mir-124-P3a-v2  Dre-Mir-124-P3b-v1  Dre-Mir-124-P3b-v2  Dre-Mir-124-P4-v1  Dre-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P1-v1  Aca-Mir-124-P1-v2  Ami-Mir-124-P1-v1  Ami-Mir-124-P1-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bta-Mir-124-P1-v1  Bta-Mir-124-P1-v2  Cel-Mir-124  Cfa-Mir-124-P1-v1  Cfa-Mir-124-P1-v2  Cpi-Mir-124-P1-v1  Cpi-Mir-124-P1-v2  Cpo-Mir-124-P1-v1  Cpo-Mir-124-P1-v2  Cte-Mir-124  Dan-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P1-v1  Dno-Mir-124-P1-v2  Dpu-Mir-124  Ete-Mir-124-P1-v1  Ete-Mir-124-P1-v2  Gga-Mir-124-P1-v1  Gga-Mir-124-P1-v2  Hme-Mir-124  Hsa-Mir-124-P1-v1  Hsa-Mir-124-P1-v2  Isc-Mir-124  Lan-Mir-124  Mdo-Mir-124-P1-v1  Mdo-Mir-124-P1-v2  Mml-Mir-124-P1-v1  Mml-Mir-124-P1-v2  Mmu-Mir-124-P1-v1  Mmu-Mir-124-P1-v2  Ocu-Mir-124-P1-v1  Ocu-Mir-124-P1-v2  Pfl-Mir-124  Pmi-Mir-124  Rno-Mir-124-P1-v1  Rno-Mir-124-P1-v2  Sha-Mir-124-P1-v1  Sha-Mir-124-P1-v2  Sko-Mir-124  Spu-Mir-124  Sto-Mir-124-P1-v1  Sto-Mir-124-P1-v2  Tca-Mir-124  Tgu-Mir-124-P1-v1  Tgu-Mir-124-P1-v2  Xtr-Mir-124-P1-v1  Xtr-Mir-124-P1-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr20: 38905541-38905601 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-124-P1-v1)
Mir-124-P1-v1 chr20: 38905541-38905601 [-] UCSC Ensembl
Mir-124-P1-v2 chr20: 38905542-38905601 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGGGGUUGAAAACGGGCCUGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGCAAAUAUCAUCGACGAGUGUG
Get precursor sequence
Structure
        10           20        30        40        50          
UUUGGGGUUGAAAACGG---|  UGC       C        A   GA       UUAAAUG 
                    GCC   UUUUCUU GUGUUCAC GCG  CCUUGAU       \
                    CGG   GAGAGAA CGUAAGUG CGC  GGAAUUA       U
GUGUGAGCAGCUACUAUAAA^  UA-       C        G   AC       ACAUACC 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-124-P1-v1_5p*

MirBase accessionMIMAT0031960
Sequence
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Dre-Mir-124-P1-v1_3p

MirBase accessionMIMAT0001819
Sequence
39- UAAGGCACGCGGUGAAUGCCAA -61
Get sequence
Validated targets TargetScanFish: dre-miR-124