MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-506-P2

Family name MIR-506 (all species)
Seed UUGGCAU
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-507
Paralogues Dno-Mir-506-P1  Dno-Mir-506-P3  Dno-Mir-506-P7f  Dno-Mir-506-P7g  Dno-Mir-506-P7h  Dno-Mir-506-P7i 
Orthologues Bta-Mir-506-P2f  Bta-Mir-506-P2g  Bta-Mir-506-P2h  Cfa-Mir-506-P2d  Cfa-Mir-506-P2e  Cpo-Mir-506-o2  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c  Hsa-Mir-506-P2  Mml-Mir-506-P2  Mmu-Mir-506-P2  Ocu-Mir-506-P2  Rno-Mir-506-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)
JH564535: 655807-655864 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P2)
Mir-506-P2 JH564535: 655807-655864 [+] UCSC Ensembl
Mir-506-P3 JH564535: 697744-697800 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUUUCAUCUGUGCUGUGUGCAGUGCCCCCACUCCAGGAAGUGCCAUCCAUGUGGCUAAAAAUAUGAUUGGCAUUUCUUAGAGUGAAGUAAUGCACAACGUGUACAACAUAGGAGUG
Get precursor sequence
Structure
        10           20        30        40        50        
CAUUUUCAUCUGUGCUG---|     G   CCC     C           UC  UGUGGC 
                    UGUGCA UGC   CACUC AGGAAGUGCCA  CA      U
                    ACACGU AUG   GUGAG UUCUUUACGGU  GU      A
GUGAGGAUACAACAUGUGCA^     A   AA-     A           UA  AUAAAA 
      110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Dno-Mir-506-P2_5p* (predicted)

mirBase accessionMIMAT0047952
Sequence
0- CACUCCAGGAAGUGCCAUCCA -21
Get sequence
Mature sequence

Dno-Mir-506-P2_3p (predicted)

mirBase accessionMIMAT0047953
Sequence
37- AUUGGCAUUUCUUAGAGUGAA -58
Get sequence