MirGeneDB ID | Dma-Novel-6 |
Family name |
DMA-NOVEL-6 (all species) |
Seed |
GGGGGAA |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
Daphnia
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Node of Origin (family) |
Daphnia
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Genome context (DMA_ASM399081) |
NC_046175.1: 6286446-6286507 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUUUUUUUCGUUUGUUCAAGACAGGCAUCAGGGGGGAACUUUACUCAGUUUGAUUCAUUUAAUUUGAAAGUCACUGGGUACGUUCGCCCUUGUUGAAUGAAUCUUAUAUUCCUUCAGUUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUUUUUCGUUUGUUCAAGA--| GG U G UU UU CAUUUA
CA CA CAGGGG GAAC UACUCAGU GAUU \
GU GU GUUCCC CUUG AUGGGUCA CUGA A
UACUUGACUUCCUUAUAUUCUAA^ AA U G C- -- AAGUUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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Mature sequence |
Dma-Novel-6_5p |
mirBase accession | None |
Sequence |
0- GGGGGGAACUUUACUCAGUUUGAUU -25
Get sequence
|
Co-mature sequence |
Dma-Novel-6_3p |
mirBase accession | None |
Sequence |
40- UCACUGGGUACGUUCGCCCUUG -62
Get sequence
|