| MirGeneDB ID | Dma-Novel-5-v1 |
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| Family name |
DMA-NOVEL-5 (all species) |
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| Seed |
ACUGGGU |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
Dma-Novel-5-v2
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| Orthologues |
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(DMA_ASM399081) |
NC_046174.1: 2509081-2509143 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCUACGAUUUAUUUCAAGCUGUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUAUACGGAGUCACUGGGUAUUCAUUGUAGGGUCGAGACACUACAUGUAUCUAGUAUGACCAGUUAUACGGAGUCACUGGGUAUUCAUUGUAGGGUCGAAUAAUGUCAGCCAUUAUCACGUCAACGUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUCUACGAUUUAUUUCAA- UU-| UCGACACUACAUGUAUCUAGUAUGACCAGUUA
GCUG UUAU \
CGAC AAUA U
CGUGCAACUGCACUAUUAC UGU^ AGCUGGGAUGUUACUUAUGGGUCACUGAGGCA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Dma-Novel-5-v1_5p |
| mirBase accession | None |
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| Sequence |
38- CACUGGGUAUUCAUUGUAGGGUCGA -63
Get sequence
|
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| Star sequence |
Dma-Novel-5-v1_3p* |
| mirBase accession | None |
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| Sequence |
0- GACACUACAUGUAUCUAGUAUGAC -24
Get sequence
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