| MirGeneDB ID | Dma-Novel-3 |
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| Family name |
DMA-NOVEL-3 (all species) |
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| Seed |
UGCACUG |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(DMA_ASM399081) |
NC_046183.1: 5280622-5280684 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAUGUUCGCAACAACAACGUUCGUCAUUGACUUCGAAACGCCCAGUUGCUUUGUGGCAUCAAGACUUCAUUGCACUGUACGGUUCGAGGCGAAUGACGAGAAACGUGAGAAAACUACUAUAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAAUGUUCGCAACAACAACG--| GA A CC U UU UGGCAU
UUCGUCAUU CUUCGAA CG CAGU GC UG C
GAGCAGUAA GGAGCUU GC GUCA CG AC A
CAUAUCAUCAAAAGAGUGCAAA^ GC G AU - UU UUCAGA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Star sequence |
Dma-Novel-3_5p* |
| mirBase accession | None |
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| Sequence |
0- ACUUCGAAACGCCCAGUUGCUUUG -24
Get sequence
|
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| Mature sequence |
Dma-Novel-3_3p |
| mirBase accession | None |
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| Sequence |
40- UUGCACUGUACGGUUCGAGGCGA -63
Get sequence
|
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