MirGeneDB

MirGeneDB ID

Dan-Mir-9-P8

Family name MIR-9 (all species)
Seed CUUUGGU
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-9b
Paralogues Dan-Mir-9-P7  Dan-Mir-9-P9  Dan-Mir-9-P10-v1  Dan-Mir-9-P10-v2  Dan-Mir-9-P11 
Orthologues Aae-Mir-9-P8  Cin-Mir-9  Cte-Mir-9  Dme-Mir-9-P8  Dmo-Mir-9-P8  Hme-Mir-9-o8  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Pmi-Mir-9  Spu-Mir-9 
Node of Origin (locus) Diptera
Node of Origin (family) Bilateria
Genome context
(Dana_caf1)
scaffold_12916: 15864555-15864614 [-] Ensembl
Clustered MiRNAs
(< 10kb from Mir-9-P8)
Mir-9-P8 scaffold_12916: 15864555-15864614 [-] Ensembl
Mir-9-P10-v1 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-9-P10-v2 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-306 scaffold_12916: 15864875-15864933 [-] Ensembl
Mir-9-P9 scaffold_12916: 15865484-15865553 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUUGCUCUUUUGUUUGCACAUUAUUUGUUCUUUGGUGAUUUUAGCUGUAUGGUGUCUCAUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUUUGCAUUUUUUCUGAGUUGCU
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Structure
        10        20          30        40        50          
GAGUUGCUCUUUUGUUUGCAC--|       UUC         UUU    G    GUGUCU 
                       AUUAUUUG   UUUGGUGAU   AGCU UAUG      \
                       UGGUAAAC   AAACCAUUA   UCGA AUAC      C
UCGUUGAGUCUUUUUUACGUUUU^       CAA         UU-    G    CUUAUA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Da
Mature sequence

Dan-Mir-9-P8_5p

MirBase accessionMIMAT0008416
Sequence
0- UCUUUGGUGAUUUUAGCUGUAUG -23
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Star sequence

Dan-Mir-9-P8_3p*

MirBase accessionNone
Sequence
38- UAGAGCUUUAUUACCAAAAACC -60
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