MirGeneDB

MirGeneDB ID

Dan-Mir-252-P1-v1

Family name MIR-252 (all species)
Seed UAAGUAC
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues Dan-Mir-252-P1-v2  Dan-Mir-252-P2 
Orthologues Aae-Mir-252-P1  Bfl-Mir-252-P1  Bge-Mir-252-P1-v1  Bge-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Cte-Mir-252-P1  Dme-Mir-252-P1-v1  Dme-Mir-252-P1-v2  Dmo-Mir-252-P1-v1  Dmo-Mir-252-P1-v2  Dpu-Mir-252-P1-v1  Dpu-Mir-252-P1-v2  Hme-Mir-252-P1  Isc-Mir-252-P1-v1  Isc-Mir-252-P1-v2  Lan-Mir-252-P1a  Lan-Mir-252-P1b  Lgi-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Dana_caf1)
scaffold_13340: 1848689-1848755 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUACAUUACUUCCUGCGAAGUCGCUUUCCUAAGUACUAGUGCCGCAGGAGUUAGGUUCGUGUCCGCAAUACCUCCUGCUGCCCAAGUGCUUAUUAAAGCGGCGAGUUGUCCAGCAAAAUACAAGG
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Structure
        10        20          30        40        50        60   
ACUUACAUUACUUCCUGCGAA--|       CC        AGU  C       UUAGGUUCGU 
                       GUCGCUUU  UAAGUACU   GC GCAGGAG          \
                       CGGCGAAA  AUUCGUGA   CG CGUCCUC          G
GGAACAUAAAACGACCUGUUGAG^       UU        ACC  U       CAUAACGCCU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Da
Mature sequence

Dan-Mir-252-P1-v1_5p

MirBase accessionNone
Sequence
0- CUAAGUACUAGUGCCGCAGGAGU -23
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Star sequence

Dan-Mir-252-P1-v1_3p*

MirBase accessionNone
Sequence
45- CCUGCUGCCCAAGUGCUUAUUA -67
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