MirGeneDB ID | Dan-Mir-2-P4b2 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
dan-mir-13b-2
|
Paralogues |
Dan-Mir-2-P1a-v1
Dan-Mir-2-P1a-v2
Dan-Mir-2-P1b-v1
Dan-Mir-2-P1b-v2
Dan-Mir-2-P2a-v1
Dan-Mir-2-P2a-v2
Dan-Mir-2-P2b
Dan-Mir-2-P3-v1
Dan-Mir-2-P3-v2
Dan-Mir-2-P4a
Dan-Mir-2-P4b1
Dan-Mir-2-P5
Dan-Mir-2-P6a
Dan-Mir-2-P6b
Dan-Mir-2-P6c
Dan-Mir-2-P7
Dan-Mir-2-P8
Dan-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P4
Dme-Mir-2-P4b2
Dmo-Mir-2-P4b2
Dpu-Mir-2-o4
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Protostomia
|
Genome context (Dana_caf1) |
scaffold_13047: 797494-797554 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGCUUCUGCUUCAUUACCUGUUUCCCAGCGCGUCGAAAUGACUGUGACUUAUGCGUAUUUGAUGUCAUAUCACAGCCAUUUUGACGAGUUUGGUGGACAGUGAAAGUCAUCGGCGCGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGCUUCUGCUUCAUUAC-- UC -| G A CU CGUAU
CUGUU CC AGC CGUCGAAAUG CUGUGA UAUG U
GACAG GG UUG GCAGUUUUAC GACACU AUAC U
AGAGCGCGGCUACUGAAAGU GU U^ A C -- UGUAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Mir-2-P4b2_5p* |
MirBase accession | None |
Sequence |
0- GCGUCGAAAUGACUGUGACUUAUG -24
Get sequence
|
Mature sequence |
Dan-Mir-2-P4b2_3p |
MirBase accession | MIMAT0008426 |
Sequence |
38- UAUCACAGCCAUUUUGACGAGUU -61
Get sequence
|