MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-506-P6

Family name MIR-506 (all species)
Seed UCACAAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-513
Paralogues Cpo-Mir-506-o1  Cpo-Mir-506-o2  Cpo-Mir-506-o3  Cpo-Mir-506-o4  Cpo-Mir-506-o5  Cpo-Mir-506-o6  Cpo-Mir-506-o7a  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Cpo-Mir-506-o8  Cpo-Mir-506-P1  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c 
Orthologues Bta-Mir-506-P6  Ete-Mir-506-P6e  Ete-Mir-506-P6f  Hsa-Mir-506-P6a1  Hsa-Mir-506-P6a2  Hsa-Mir-506-P6b  Hsa-Mir-506-P6c  Mml-Mir-506-P6a  Mml-Mir-506-P6b1  Mml-Mir-506-P6b2  Mml-Mir-506-P6c1  Mml-Mir-506-P6c2  Ocu-Mir-506-P6  Rno-Mir-506-P6 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 2797729-2797786 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P6)		 Mir-506-o2 scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-o3 scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2b scaffold_84: 2763265-2763322 [+] UCSC
Mir-506-P2c scaffold_84: 2771646-2771702 [+] UCSC
Mir-506-P6 scaffold_84: 2797729-2797786 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCAUAUUCAACCACUGAGUGUGCAGUGCUUUUCACAAGAAAGUGUCAUUCAUGUGUACUGAAAUAUGAGUGGCAUUUUCUUGCGAAGAGCAAUGUACAGCAUAUCAUGCUUAUGUGGU
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Structure
        10          20        30        40        50        
CCAUAUUCAACCACUGAG--|     G        A                   UGUA 
                    UGUGCA UGCUUUUC CAAGAAAGUGUCAUUCAUG    C
                    ACAUGU ACGAGAAG GUUCUUUUACGGUGAGUAU    U
UGGUGUAUUCGUACUAUACG^     A        C                   AAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-506-P6_5p
mirBase accessionMIMAT0047437
Sequence 
0- UUCACAAGAAAGUGUCAUUCAUG -23
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Star sequence

Cpo-Mir-506-P6_3p*
mirBase accessionMIMAT0047438
Sequence 
35- UGAGUGGCAUUUUCUUGCGAAGA -58
Get sequence