MirGeneDB ID | Cpo-Mir-28-P2 |
Family name |
MIR-28 (all species) |
Seed |
UAGACUG |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-151
|
Paralogues |
Cpo-Mir-28-P1
Cpo-Mir-28-P3
|
Orthologues |
Bta-Mir-28-P2
Cfa-Mir-28-P2
Dno-Mir-28-P2
Ete-Mir-28-P2
Hsa-Mir-28-P2
Mml-Mir-28-P2
Mmu-Mir-28-P2
Ocu-Mir-28-P2
Rno-Mir-28-P2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_17: 36727980-36728035 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
ACACAGAUGACCGAAGCACUUUUCCUGCCCUCGAGGAGCUCACAGUCUAGUAUGUCUCUAUCCUACUAGACUGAGGCUCCUUGAGGACAGGGAUCGUCAUACUCACCUCGGUGUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACACAGAUGACCGAAGC--| UU C CA UGUCU
AC UUCCUG CCUCGAGGAGCU CAGUCUAGUA \
UG AGGGAC GGAGUUCCUCGG GUCAGAUCAU C
GUUGUGGCUCCACUCAUAC^ CU A A- CCUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Cpo-Mir-28-P2_5p* |
mirBase accession | MIMAT0047030 |
Sequence |
0- UCGAGGAGCUCACAGUCUAGUA -22
Get sequence
|
Mature sequence |
Cpo-Mir-28-P2_3p |
mirBase accession | MIMAT0047031 |
Sequence |
35- CUAGACUGAGGCUCCUUGAGG -56
Get sequence
|