MirGeneDB ID | Cmi-Mir-194-P1 |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-194-P1
Ami-Mir-194-P1
Bta-Mir-194-P1
Cfa-Mir-194-P1
Cli-Mir-194-P1
Cpi-Mir-194-P1
Ebu-Mir-194-o1
Ete-Mir-194-P1
Gga-Mir-194-P1
Gja-Mir-194-P1
Hsa-Mir-194-P1
Lch-Mir-194-P1
Mml-Mir-194-P1
Mmu-Mir-194-P1
Mun-Mir-194-P1
Oan-Mir-194-P1
Ocu-Mir-194-P1
Pbv-Mir-194-P1
Pma-Mir-194-o1
Rno-Mir-194-P1
Spt-Mir-194-P1
Sto-Mir-194-P1
Tgu-Mir-194-P1
Xla-Mir-194-P1a
Xla-Mir-194-P1b
Xtr-Mir-194-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635979.1: 1871220-1871275 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCCAGACGGCAAACAGCAGUGUGCAUCAGGUGUAACAGCAACUCCAUGUGGAUGGCACUGGCUUCCAGUGGAGCUGCUGUUACUUUCGAUGGGCACUUACAUCAUAUCAAGGAUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCCAGACGGCAAACAGC--| G AG U A G UGGCA
AGUGU CAUC G GUAACAGCA CUCCAU UGGA \
UCACG GUAG U CAUUGUCGU GAGGUG ACCU C
CCUAGGAACUAUACUACAU^ G CU U C - UCGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-194-P1_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGA -22
Get sequence
|
Star sequence |
Cmi-Mir-194-P1_3p* |
mirBase accession | None |
Sequence |
35- CAGUGGAGCUGCUGUUACUUU -56
Get sequence
|