MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-194-P1

Family name MIR-194 (all species)
Seed GUAACAG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-194-P1  Ami-Mir-194-P1  Bta-Mir-194-P1  Cfa-Mir-194-P1  Cli-Mir-194-P1  Cpi-Mir-194-P1  Ebu-Mir-194-o1  Ete-Mir-194-P1  Gga-Mir-194-P1  Gja-Mir-194-P1  Hsa-Mir-194-P1  Lch-Mir-194-P1  Mml-Mir-194-P1  Mmu-Mir-194-P1  Mun-Mir-194-P1  Oan-Mir-194-P1  Ocu-Mir-194-P1  Pbv-Mir-194-P1  Pma-Mir-194-o1  Rno-Mir-194-P1  Spt-Mir-194-P1  Sto-Mir-194-P1  Tgu-Mir-194-P1  Xla-Mir-194-P1a  Xla-Mir-194-P1b  Xtr-Mir-194-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635979.1: 1871220-1871275 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAGACGGCAAACAGCAGUGUGCAUCAGGUGUAACAGCAACUCCAUGUGGAUGGCACUGGCUUCCAGUGGAGCUGCUGUUACUUUCGAUGGGCACUUACAUCAUAUCAAGGAUCC
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Structure
        10          20        30        40        50        
GCCAGACGGCAAACAGC--|    G    AG U         A      G    UGGCA 
                   AGUGU CAUC  G GUAACAGCA CUCCAU UGGA     \
                   UCACG GUAG  U CAUUGUCGU GAGGUG ACCU     C
CCUAGGAACUAUACUACAU^    G    CU U         C      -    UCGGU 
    110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-194-P1_5p

mirBase accessionNone
Sequence
0- UGUAACAGCAACUCCAUGUGGA -22
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Star sequence

Cmi-Mir-194-P1_3p*

mirBase accessionNone
Sequence
35- CAGUGGAGCUGCUGUUACUUU -56
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