MirGeneDB

MirGeneDB ID

Cli-Mir-19-P2b

Family name MIR-19 (all species)
Seed GUGCAAA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-19b-2
Paralogues Cli-Mir-19-P1  Cli-Mir-19-P2a 
Orthologues Aca-Mir-19-P2b  Bta-Mir-19-P2b  Cfa-Mir-19-P2b  Cpi-Mir-19-P2b  Cpo-Mir-19-P2b  Dno-Mir-19-P2b  Dre-Mir-19-P2b1  Ete-Mir-19-P2b  Gga-Mir-19-P2b  Hsa-Mir-19-P2b  Mdo-Mir-19-P2b  Mml-Mir-19-P2b  Mmu-Mir-19-P2b  Oan-Mir-19-P2b  Ocu-Mir-19-P2b  Rno-Mir-19-P2b  Sha-Mir-19-P2b  Sto-Mir-19-P2b  Tgu-Mir-19-P2b  Xtr-Mir-19-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold72: 3451991-3452050 [-]
Clustered MiRNAs
(< 10kb from Mir-19-P2b)
Mir-92-P2b scaffold72: 3451682-3451746 [-]
Mir-92-P1b scaffold72: 3451822-3451883 [-]
Mir-19-P2b scaffold72: 3451991-3452050 [-]
Mir-17-P3b scaffold72: 3452115-3452175 [-]
Mir-17-P2b scaffold72: 3452309-3452373 [-]
Mir-17-P1b scaffold72: 3452469-3452526 [-]
Precursor
(pre-Mir +30nt flank)
UUUCUGGAGAAGACAGUGCUAAUUACAGUCAGUUUUGCAGGUUUGCAUCCCAGCUUACUAAAAUUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGGUGAAUCUGUGGUGAAUAA
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Structure
        10           20        30         40         50          
UUUCUGGAGAAGACAGU---   A                  -  -|     UCC    UUACU 
                    GCU AUUACAGUCAGUUUUGCA GG UUUGCA   CAGC     \
                    UGG UGGUGUCAGUCAAAACGU CC AAACGU   GUCG     A
AAUAAGUGGUGUCUAAGUGG   -                  A  U^     ---    UUAAA 
.       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Cli-Mir-19-P2b_5p*

MirBase accessionMIMAT0038431
Sequence
0- AGUUUUGCAGGUUUGCAUCCCAGC -24
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Mature sequence

Cli-Mir-19-P2b_3p

MirBase accessionMIMAT0038430
Sequence
37- UGUGCAAAUCCAUGCAAAACUGA -60
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