MirGeneDB

MirGeneDB ID

Cli-Mir-126-v2

Family name MIR-126 (all species)
Seed CGUACCG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-126
Paralogues Cli-Mir-126-v1  Cli-Mir-126-v3 
Orthologues Aca-Mir-126-v2  Ami-Mir-126-v2  Bta-Mir-126-v2  Cfa-Mir-126-v2  Cin-Mir-126-v2  Cpi-Mir-126-v2  Cpo-Mir-126-v2  Dno-Mir-126-v2  Ete-Mir-126-v2  Gga-Mir-126-v2  Hsa-Mir-126-v2  Mdo-Mir-126-v2  Mml-Mir-126-v2  Mmu-Mir-126-v2  Oan-Mir-126-v2  Ocu-Mir-126-v2  Rno-Mir-126-v2  Sha-Mir-126-v2  Sto-Mir-126-v2  Tgu-Mir-126-v2  Xtr-Mir-126-v2 
Node of Origin (locus) Olfactores
Node of Origin (family) Olfactores
Genome context
(colLiv2)
scaffold642: 1958266-1958324 [-]
Clustered MiRNAs
(< 10kb from Mir-126-v2)
Mir-126-v1 scaffold642: 1958266-1958324 [-]
Mir-126-v2 scaffold642: 1958266-1958324 [-]
Mir-126-v3 scaffold642: 1958266-1958324 [-]
Precursor
(pre-Mir +30nt flank)
GAAGAGCAGCGGCCACCGCUGGUGACGGCCCAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCGCUGUGGCCAGCACGGGCAUCAUGCAGUAAA
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Structure
        10          20        30        40        50         
GAAGAGCAGCGGCCACC--|     G     C           U       CGCUGUGAC 
                   GCUGGU ACGGC CAUUAUUACUU UGGUACG         \
                   CGACCG UGUCG GUAAUAAUGAG GCCAUGC         A
AAAUGACGUACUACGGGCA^     G     C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Cli-Mir-126-v2_5p*

MirBase accessionMIMAT0038499
Sequence
0- CAUUAUUACUUUUGGUACGCGC -22
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Mature sequence

Cli-Mir-126-v2_3p

MirBase accessionMIMAT0038500
Sequence
37- UCGUACCGUGAGUAAUAAUGCG -59
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