MirGeneDB 2.1

MirGeneDB ID

Cgi-Novel-6

Family name CGI-NOVEL-19 (all species)
Seed GCUAUAA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. gigas
Node of Origin (family) C. gigas
Genome context
(CGI_GCA_000297895.1)
scaffold631: 283594-283651 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGGAAGCUGGCUUUAGAGUAAAACUGGCAGCUAUAAUGGUUGUCAUUUGUACGGUAUACAGGUAUAAAUGCAACCAUUAUUGCUACUGGUUUAUUCGUCUUUGACAUCACCUGAAU
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Structure
        10           20        30        40        50         
CAUGGAAGCUGGCUUUA---|      A UG C   U          U        CGGUA 
                    GAGUAAA C  G AGC AUAAUGGUUG CAUUUGUA     \
                    CUUAUUU G  C UCG UAUUACCAAC GUAAAUAU     U
UAAGUCCACUACAGUUUCUG^      - GU A   U          -        GGACA 
      110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Novel-6_5p

mirBase accessionNone
Sequence
0- AGCUAUAAUGGUUGUCAUUUGUA -23
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Star sequence

Cgi-Novel-6_3p*

mirBase accessionNone
Sequence
36- UAAAUGCAACCAUUAUUGCUAC -58
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