MirGeneDB 2.1

MirGeneDB ID

Cgi-Novel-2

Family name CGI-NOVEL-2 (all species)
Seed UUGUAGA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. gigas
Node of Origin (family) C. gigas
Genome context
(CGI_GCA_000297895.1)
scaffold258: 167543-167599 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACUUGGCAGCAACGAAUCGCGUGAUGUUAAUUGUGUCCGUUUCUGCAAUUAAAGAAUAUAACGAAUUGUAGAAAACGACACAAUAUACAGAACGUGAACGAUCAUCAGACGACAGA
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Structure
        10          20        30        40        50        
GACUUGGCAGCAACGAA--|     GA   UA        CG           AAAGAA 
                   UCGCGU  UGU  AUUGUGUC  UUUCUGCAAUU      \
                   AGUGCA  ACA  UAACACAG  AAAGAUGUUAA      U
AGACAGCAGACUACUAGCA^     AG   UA        CA           GCAAUA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Novel-2_5p*

mirBase accessionNone
Sequence
0- AUUGUGUCCGUUUCUGCAAUUA -22
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Mature sequence

Cgi-Novel-2_3p

mirBase accessionNone
Sequence
35- AUUGUAGAAAACGACACAAUAU -57
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