MirGeneDB

MirGeneDB ID

Cgi-Mir-96-P3

Family name MIR-96 (all species)
Seed AUGGCAC
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-96-P1a  Cgi-Mir-96-P1b  Cgi-Mir-96-P2h  Cgi-Mir-96-P2i 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)
scaffold626: 18351-18408 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAUUUUUUAACCAAAGGCUUCACUCCUUGAAUGGCACUGGUAGAAUUCACGGGGUAUCACUGACCGUGGACUAUCAAUUGCCAUACAUGGCGUGUAAGUGAUGUCGUCUGGAAGAUG
Get precursor sequence
Structure
        10         20         30         40        50         
UUAUUUUUUAACCAAAG-    -   U  U  A      C-|     AA       GGUAU 
                  GCUU CAC CC UG AUGGCA  UGGUAG  UUCACGG     \
                  UGAA GUG GG AC UACCGU  ACUAUC  AGGUGCC     C
GUAGAAGGUCUGCUGUAG    U   C  U  A      UA^     --       AGUCA 
      110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-96-P3_5p

MirBase accessionNone
Sequence
0- AAUGGCACUGGUAGAAUUCACGG -23
Get sequence
Star sequence

Cgi-Mir-96-P3_3p*

MirBase accessionNone
Sequence
36- GUGGACUAUCAAUUGCCAUACA -58
Get sequence