MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-96-P1h

Family name MIR-96 (all species)
Seed UUUGGCA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-96-P1i  Cgi-Mir-96-P2l  Cgi-Mir-96-P2m  Cgi-Mir-96-P3 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Efe-Mir-96-P1  Esc-Mir-96-P1h  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Npo-Mir-96-P1h  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ovu-Mir-96-P1h  Pbv-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold77: 200772-200830 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAAUCCACGCAGAUUUCGUCAGCAUUUCAUUUGGCACUUGUGGAAUAAUCGUUAAGUUUACAAAGAUUAUACAUUGGUGCCAAGUAAUCUGUGACGUCAUGGCACCUGAGGUUAAAA
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Structure
        10           20        30        40        50         
UUGAAUCCACGCAGAUUU---|    G  UUUC          U   GA      GUUAAG 
                     CGUCA CA    AUUUGGCACU GUG  AUAAUC      U
                     GCAGU GU    UGAACCGUGG UAC  UAUUAG      U
AAAAUUGGAGUCCACGGUACU^    -  CUAA          U   A-      AAACAU 
       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-96-P1h_5p
mirBase accessionNone
Sequence 
0- AUUUGGCACUUGUGGAAUAAUCG -23
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Star sequence

Cgi-Mir-96-P1h_3p*
mirBase accessionNone
Sequence 
37- AUUAUACAUUGGUGCCAAGUAA -59
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