MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-67-P4

Family name MIR-67 (all species)
Seed ACAACCU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-67-P5  Cgi-Mir-67-P6 
Orthologues Asu-Mir-67  Bge-Mir-67  Cbr-Mir-67  Cel-Mir-67  Csc-Mir-67  Cte-Mir-67  Dma-Mir-67  Dpu-Mir-67  Isc-Mir-67  Lan-Mir-67  Lgi-Mir-67  Npo-Mir-67  Obi-Mir-67  Ovu-Mir-67  Sme-Mir-67 
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)
scaffold146: 102295-102351 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUAACUUCUUUCUUUUCUGGUUGUGGAACCUUGUUCAGUUGGGUUGUUGCGUGACAGCUACGUUACAACCUGCUUGAAUGAGGCUUGACGACACAGUACCUUCAGCGGCAGACGA
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Structure
        10         20         30        40        50        
CAUUAACUUCUUUCUUUU-   -|    G  A   UG     UU       U  GUGAC 
                   CUG GUUGU GA CCU  UUCAG  GGGUUGU GC     \
                   GAC CAGCA UU GGA  AAGUU  UCCAACA UG     A
AGCAGACGGCGACUUCCAU   A^    G  C   GU     CG       U  CAUCG 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-67-P4_5p*

mirBase accessionNone
Sequence
0- CCUUGUUCAGUUGGGUUGUUGC -22
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Mature sequence

Cgi-Mir-67-P4_3p

mirBase accessionNone
Sequence
35- UACAACCUGCUUGAAUGAGGCU -57
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