MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-317-P2

Family name MIR-317 (all species)
Seed GAACACA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-317-P1 
Orthologues Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Esc-Mir-317  Hme-Mir-317  Isc-Mir-317  Lgi-Mir-317  Npo-Mir-317  Obi-Mir-317  Ovu-Mir-317  Tca-Mir-317 
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)
scaffold622: 468583-468640 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAACGAAAGGGACUCUACUCAUGUGGGUGAAGGUACCAUUAGGUGUUCACAUAAUUAAUGUUGUGAACACAGCUGGUGGUAUCUUUUCUUCUGUGAGAGAAUUCGGCAAAAACUUCU
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Structure
        10          20        30        40          50       
UGAACGAAAGGGACUCUA--      UG  U              --|        UAAU 
                    CUCAUG  GG GAAGGUACCAUUAG  GUGUUCACA    U
                    GAGUGU  UC UUUCUAUGGUGGUC  CACAAGUGU    A
UCUUCAAAAACGGCUUAAGA      CU  U              GA^        UGUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-317-P2_5p*

mirBase accessionNone
Sequence
0- AAGGUACCAUUAGGUGUUCACA -22
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Mature sequence

Cgi-Mir-317-P2_3p

mirBase accessionNone
Sequence
34- UGAACACAGCUGGUGGUAUCUUUU -58
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