MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Hme-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Npo-Mir-278  Obi-Mir-278  Ovu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Sko-Mir-278  Sme-Mir-278  Spu-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold1867: 73516-73574 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUUUGGCAAUAUGACCCAUUGUUGCGUUCGUUCGGAAGCUCAACAAAGAUCAUUAAACUAACGAUCGGUGGGACUUUCGUUCGAUUGCAAUGAUCGGGCUCGACAUCCAUUCCAAA
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Structure
        10         20         30        40         50          
AUUUUUUGGCAAUAUGA-   -  UG     U   UU      -|   ACAAA    AUUAA 
                  CCC AU  UUGCG UCG  CGGAAG CUCA     GAUC     \
                  GGG UA  AACGU AGC  GCUUUC GGGU     CUAG     A
AAACCUUACCUACAGCUC   C  GU     U   UU      A^   GG---    CAAUC 
       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-278_5p*
mirBase accessionNone
Sequence 
0- UCGUUCGGAAGCUCAACAAAGAUC -24
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Mature sequence

Cgi-Mir-278_3p
mirBase accessionNone
Sequence 
37- UCGGUGGGACUUUCGUUCGAUU -59
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