MirGeneDB ID | Cgi-Mir-252-P1 |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAG |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
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Paralogues |
Cgi-Mir-252-P2
|
Orthologues |
Asu-Mir-252-P1
Bfl-Mir-252-P1-v1
Bfl-Mir-252-P1-v2
Bge-Mir-252-P1
Bla-Mir-252-P1-v1
Bla-Mir-252-P1-v2
Cbr-Mir-252-P1
Cel-Mir-252-P1
Csc-Mir-252-P1
Cte-Mir-252-P1
Dan-Mir-252-P1a
Dan-Mir-252-P1b
Dma-Mir-252-P1-v1
Dma-Mir-252-P1-v2
Dme-Mir-252-P1a
Dme-Mir-252-P1b
Dmo-Mir-252-P1a
Dmo-Mir-252-P1b
Dpu-Mir-252-P1
Dsi-Mir-252-P1a
Dsi-Mir-252-P1b
Dya-Mir-252-P1a
Dya-Mir-252-P1b
Esc-Mir-252-P1
Hme-Mir-252-P1
Isc-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Lpo-Mir-252-P1c
Lpo-Mir-252-P1e
Lpo-Mir-252-P1f
Npo-Mir-252-P1
Obi-Mir-252-P1
Ovu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Sko-Mir-252-P1
Spu-Mir-252-P1
Tca-Mir-252-P1
Xbo-Mir-252-P1g
Xbo-Mir-252-P1h
Xbo-Mir-252-P1i
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (CGI_GCA_000297895.1) |
scaffold1366: 96960-97021 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUCCUCCUGUUGUCUAGCCGCUCCCGUGUUAAGUAGUGGUGCCGCAGGUACAAGCUAUACUCGAGUCUACCGGCGCAUCUCUACUUUACUCGGGGUUUGGCCUCGGUUAAUGAUAACGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACCUCCUCCUGUUGUCUA- C-| U U U C A CAAGCUAU
GCCG UCCCG GU AAGUAG GGUGC GC GGUA \
CGGU GGGGC CA UUCAUC CUACG CG CCAU A
CAGCAAUAGUAAUUGGCUC UU^ U U U - G CUGAGCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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Mature sequence |
Cgi-Mir-252-P1_5p |
mirBase accession | None |
Sequence |
0- UUAAGUAGUGGUGCCGCAGGUAC -23
Get sequence
|
Star sequence |
Cgi-Mir-252-P1_3p* |
mirBase accession | None |
Sequence |
40- ACCGGCGCAUCUCUACUUUACU -62
Get sequence
|