MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-252-P2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)
scaffold1366: 96960-97021 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUCCUCCUGUUGUCUAGCCGCUCCCGUGUUAAGUAGUGGUGCCGCAGGUACAAGCUAUACUCGAGUCUACCGGCGCAUCUCUACUUUACUCGGGGUUUGGCCUCGGUUAAUGAUAACGAC
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Structure
        10         20         30        40        50        60 
ACCUCCUCCUGUUGUCUA-    C-|    U  U      U     C  A    CAAGCUAU 
                   GCCG  UCCCG GU AAGUAG GGUGC GC GGUA        \
                   CGGU  GGGGC CA UUCAUC CUACG CG CCAU        A
CAGCAAUAGUAAUUGGCUC    UU^    U  U      U     -  G    CUGAGCUC 
120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-252-P1_5p

mirBase accessionNone
Sequence
0- UUAAGUAGUGGUGCCGCAGGUAC -23
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Star sequence

Cgi-Mir-252-P1_3p*

mirBase accessionNone
Sequence
40- ACCGGCGCAUCUCUACUUUACU -62
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