MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-2-o35

Family name MIR-2 (all species)
Seed AUCACAG
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-2-o28  Cgi-Mir-2-o29  Cgi-Mir-2-o30  Cgi-Mir-2-o31a  Cgi-Mir-2-o31b  Cgi-Mir-2-o32  Cgi-Mir-2-o33  Cgi-Mir-2-o34 
Orthologues
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)
scaffold1503: 13873-13931 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUGGAUAGUGGAAAUGUGUGGUGUGGACCAAUCAAAGUUGUUGUGAUGUGUGAGUUACUGACCAUAUCACAGCACGCUUUGAUGGCUUCACAGACCCACAAAAGCUACCUGACAGAG
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Structure
        10        20            30        40         50        
ACAUGGAUAGUGGAAAUGU    ---      -|  A       -            UGAGU 
                   GUGG   UGUGGA CCA UCAAAGU UGUUGUGAUGUG     U
                   CACC   ACACUU GGU AGUUUCG ACGACACUAUAC     A
GAGACAGUCCAUCGAAAA-    CAG      C^  -       C            CAGUC 
       110        100        90         80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-2-o35_5p*

mirBase accessionNone
Sequence
0- CAAUCAAAGUUGUUGUGAUGUG -22
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Mature sequence

Cgi-Mir-2-o35_3p

mirBase accessionNone
Sequence
36- UAUCACAGCACGCUUUGAUGGCU -59
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