MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Cte-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Esc-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Npo-Mir-1992  Obi-Mir-1992  Ovu-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(CGI_GCA_000297895.1)		 scaffold43940: 216503-216560 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGGCCUUACUAACCUUGUGAUUUCUGUUCGUCAGUGGUGGAUUGCUAGAUAUAAAUCAACUUAUCAGCAGUUGUACCACUGAUUUGCAGAGAAAACAGCCAAACUAACAGCACUGU
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Structure
        10          20        30        40         50        
CUUGGCCUUACUAACCU--   GA       UC          -|      A    UAAA 
                   UGU  UUUCUGU  GUCAGUGGUG GAUUGCU GAUA    U
                   ACA  AGAGACG  UAGUCACCAU UUGACGA CUAU    C
UGUCACGACAAUCAAACCG   AA       UU          G^      -    UCAA 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-1992_5p*
mirBase accessionNone
Sequence 
0- CGUCAGUGGUGGAUUGCUAGAUA -23
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Mature sequence

Cgi-Mir-1992_3p
mirBase accessionNone
Sequence 
35- UCAGCAGUUGUACCACUGAUUUG -58
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