MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-10-P6

Family name MIR-10 (all species)
Seed UUACCCU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-10-P1  Cgi-Mir-10-P2  Cgi-Mir-10-P3  Cgi-Mir-10-P5 
Orthologues Cte-Mir-10-P6  Efe-Mir-10-P6  Esc-Mir-10-P6  Lgi-Mir-10-P6  Npo-Mir-10-P6  Nve-Mir-10  Ovu-Mir-10-P6 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Eumetazoa
Genome context
(CGI_GCA_000297895.1)
scaffold1179: 770393-770460 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAACGGUAUUUUGGAAUCUCGAUAUGUAACCUUACCCUGUAAAUCGGAGAAGUCUGAAUUUCCUCAGUCAGGUAACUUCUCGUUUCACAGGGUAUAUUUACCAAUCGGGACUGACAACACGGAGCCAG
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Structure
        10          20        30        40         50        60    
CAACGGUAUUUUGGAAU--      AU    CCU        -|   CG       CUGAAUUUCC 
                   CUCGAU  GUAA   UACCCUGU AAAU  GAGAAGU          \
                   GGGCUA  CAUU   AUGGGACA UUUG  CUCUUCA          U
GACCGAGGCACAACAGUCA      AC    UAU        C^   --       AUGGACUGAC 
      120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-10-P6_5p

mirBase accessionNone
Sequence
0- CUUACCCUGUAAAUCGGAGAAGU -23
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Star sequence

Cgi-Mir-10-P6_3p*

mirBase accessionNone
Sequence
46- UUCUCGUUUCACAGGGUAUAUU -68
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