MirGeneDB 2.1

MirGeneDB ID

Cgi-Bantam

Family name BANTAM (all species)
Seed GAGAUCA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Bantam  Asu-Bantam-o1  Asu-Bantam-o2  Asu-Bantam-o3  Bge-Bantam  Bpl-Bantam  Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4  Cel-Bantam-P1  Cel-Bantam-P2  Cel-Bantam-P3  Cel-Bantam-P4  Cel-Bantam-P5a  Cel-Bantam-P5b  Cel-Bantam-P5c  Csc-Bantam-P16  Csc-Bantam-P17  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Efe-Bantam-P6  Efe-Bantam-P7  Efe-Bantam-P8  Esc-Bantam  Hme-Bantam  Isc-Bantam-P9a  Isc-Bantam-P9b  Lan-Bantam  Lgi-Bantam  Lpo-Bantam-P10  Lpo-Bantam-P11  Lpo-Bantam-P12  Lpo-Bantam-P13  Lpo-Bantam-P14  Lpo-Bantam-P15  Npo-Bantam  Ovu-Bantam  Sme-Bantam-P18  Sme-Bantam-P19  Sme-Bantam-P20  Tca-Bantam 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)
scaffold950: 540423-540481 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGAAAAUAUGCCUUUUUAACACACAAAACUGGUUUUCAUAAUGGUUUGAGAUUGUGUUAGAUUCUGAGAUCAUUGUGAAAACUGAUUUUGUAACCACACUCAACUAUAAACCUUGUC
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Structure
        10        20          30        40        50         
AGAGAAAAUAUGCCUUUUUAACAC--|     CU                 G   UUGUG 
                          ACAAAA  GGUUUUCAUAAUGGUUU AGA     \
                          UGUUUU  UCAAAAGUGUUACUAGA UCU     U
CUGUUCCAAAUAUCAACUCACACCAA^     AG                 G   UAGAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Bantam_5p*

mirBase accessionNone
Sequence
0- CUGGUUUUCAUAAUGGUUUGAGA -23
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Mature sequence

Cgi-Bantam_3p

mirBase accessionNone
Sequence
36- UGAGAUCAUUGUGAAAACUGAUU -59
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