MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-330-v1

Family name MIR-330 (all species)
Seed AAAGCAC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-330
Paralogues Cfa-Mir-330-v2 
Orthologues Bta-Mir-330-v1  Cpo-Mir-330-v1  Dno-Mir-330-v1  Ete-Mir-330-v1  Hsa-Mir-330-v1  Mml-Mir-330-v1  Mmu-Mir-330-v1  Ocu-Mir-330-v1  Rno-Mir-330-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr1: 109922155-109922218 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-330-v1)
Mir-330-v1 chr1: 109922155-109922218 [+] UCSC Ensembl
Mir-330-v2 chr1: 109922155-109922218 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCCGCUCCUUACGCGGCCCCCAUU
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Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCUUU-    AUCA-           --    -|   U   AG   CUGCAAG 
                  GGCG     CUGCCUCUCUG  GGCC UGUG CUU  GCU       \
                  UCGC     GACGGAGAGAC  CCGG ACAC GAA  CGA       A
UUACCCCCGGCGCAUUCC    CUCGC           GU    C^   -   A-   GCCAACU 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-330-v1_5p*

mirBase accessionMIMAT0009893
Sequence
0- UCUCUGGGCCUGUGUCUUAGGCU -23
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Proposed targets TargetScanVert: cfa-miR-330
miRDB: MIMAT0009893
Mature sequence

Cfa-Mir-330-v1_3p

mirBase accessionNone
Sequence
40- CAAAGCACACGGCCUGCAGAGAGG -64
Get sequence