MirGeneDB

MirGeneDB ID

Cfa-Mir-23-P1

Family name MIR-23 (all species)
Seed UCACAUU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-23a
Paralogues Cfa-Mir-23-P2 
Orthologues Aca-Mir-23-P1  Ami-Mir-23-P1  Bta-Mir-23-P1  Cpi-Mir-23-P1  Cpo-Mir-23-P1  Dno-Mir-23-P1  Dre-Mir-23-P1  Ete-Mir-23-P1  Hsa-Mir-23-P1  Mdo-Mir-23-P1  Mml-Mir-23-P1  Mmu-Mir-23-P1  Oan-Mir-23-P1  Rno-Mir-23-P1  Sha-Mir-23-P1  Sto-Mir-23-o1  Sto-Mir-23-P1  Xtr-Mir-23-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3)
chr20: 48620332-48620389 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-23-P1)
Mir-23-P1 chr20: 48620332-48620389 [+] UCSC Ensembl
Mir-27-P1 chr20: 48620555-48620616 [+] UCSC Ensembl
Mir-24-P1 chr20: 48620685-48620744 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCCCCCACCCCUGUGCCAUGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUGCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGAGCCCUGCCUCUGGGGCUGC
Get precursor sequence
Structure
        10         20        30         40        50        
UGCCCCCCCACCCCUGUGC-  U  C   C   -|        G    G     GCUGC 
                    CA GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                    GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
CGUCGGGGUCUCCGUCCCGA  C  A   A   U^        G    A     CACUG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-23-P1_5p*

MirBase accessionNone
Sequence
0- GGGGUUCCUGGGGAUGGGAUUU -22
Get sequence
Mature sequence

Cfa-Mir-23-P1_3p

MirBase accessionMIMAT0006640
Sequence
36- AUCACAUUGCCAGGGAUUUCCA -58
Get sequence
Validated targets TargetScanVert: cfa-miR-23a
miRDB: MIMAT0006640