MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-215
Paralogues Cfa-Mir-192-P2 
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr38: 14895116-14895175 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-192-P1)
Mir-192-P1 chr38: 14895116-14895175 [-] UCSC Ensembl
Mir-194-P1 chr38: 14895401-14895458 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCAUCACUAAAAAAUGGUGUACAGGAAAAUGACCUACGAAUUGAUAGACAAUUUGGCUAAGUUUGUCUGUCAUUUUUGUAGGCCAAUAUUCUGUAUAUCUCUUCUGCUUCAAAAUCAG
Get precursor sequence
Structure
        10          20        30        40         50         
AGUCAUCACUAAAAAAU--           AAA  A        U-|        AUUUGG 
                   GGUGUACAGGA   UG CCUACGAA  UGAUAGACA      \
                   CUAUAUGUCUU   AC GGAUGUUU  ACUGUCUGU      C
GACUAAAACUUCGUCUUCU           AUA  C        UU^        UUGAAU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-192-P1_5p

mirBase accessionMIMAT0009848
Sequence
0- AUGACCUACGAAUUGAUAGACA -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-215
miRDB: MIMAT0009848
Star sequence

Cfa-Mir-192-P1_3p*

mirBase accessionNone
Sequence
37- UCUGUCAUUUUUGUAGGCCAAUA -60
Get sequence