MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-154-P36

Family name MIR-154 (all species)
Seed GGUUACC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-409
Paralogues Cfa-Mir-154-P2-v1  Cfa-Mir-154-P2-v2  Cfa-Mir-154-P3a-v1  Cfa-Mir-154-P3a-v2  Cfa-Mir-154-P3b  Cfa-Mir-154-P4a  Cfa-Mir-154-P4b  Cfa-Mir-154-P5  Cfa-Mir-154-P6  Cfa-Mir-154-P7  Cfa-Mir-154-P8  Cfa-Mir-154-P9  Cfa-Mir-154-P10  Cfa-Mir-154-P12  Cfa-Mir-154-P13  Cfa-Mir-154-P14  Cfa-Mir-154-P15  Cfa-Mir-154-P16  Cfa-Mir-154-P17  Cfa-Mir-154-P18  Cfa-Mir-154-P19  Cfa-Mir-154-P20  Cfa-Mir-154-P21  Cfa-Mir-154-P22  Cfa-Mir-154-P23  Cfa-Mir-154-P24  Cfa-Mir-154-P25  Cfa-Mir-154-P26  Cfa-Mir-154-P27  Cfa-Mir-154-P28  Cfa-Mir-154-P29  Cfa-Mir-154-P30  Cfa-Mir-154-P31  Cfa-Mir-154-P33  Cfa-Mir-154-P34  Cfa-Mir-154-P35 
Orthologues Bta-Mir-154-P36  Cpo-Mir-154-P36  Dno-Mir-154-P36  Ete-Mir-154-P36  Hsa-Mir-154-P36  Mml-Mir-154-P36  Mmu-Mir-154-P36  Ocu-Mir-154-P36  Rno-Mir-154-P36 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr8: 69293782-69293835 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P36)
Mir-154-P7 chr8: 69253808-69253866 [+] UCSC Ensembl
Mir-154-P13 chr8: 69255095-69255150 [+] UCSC Ensembl
Mir-154-P2-v1 chr8: 69255553-69255607 [+] UCSC Ensembl
Mir-154-P2-v2 chr8: 69255554-69255606 [+] UCSC Ensembl
Mir-154-P8 chr8: 69256764-69256820 [+] UCSC Ensembl
Mir-154-P3a-v1 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P3a-v2 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P26 chr8: 69257795-69257852 [+] UCSC Ensembl
Mir-154-P4a chr8: 69258540-69258597 [+] UCSC Ensembl
Mir-154-P4b chr8: 69258856-69258913 [+] UCSC Ensembl
Mir-154-P18 chr8: 69261399-69261454 [+] UCSC Ensembl
Mir-154-P22 chr8: 69263406-69263463 [+] UCSC Ensembl
Mir-154-P19 chr8: 69265169-69265226 [+] UCSC Ensembl
Mir-154-P33 chr8: 69267179-69267234 [+] UCSC Ensembl
Mir-376-P5 chr8: 69269753-69269810 [+] UCSC Ensembl
Mir-376-P4 chr8: 69270115-69270172 [+] UCSC Ensembl
Mir-376-P3 chr8: 69270499-69270556 [+] UCSC Ensembl
Mir-376-P2 chr8: 69270881-69270938 [+] UCSC Ensembl
Mir-376-P1 chr8: 69271259-69271316 [+] UCSC Ensembl
Mir-154-P34 chr8: 69271824-69271885 [+] UCSC Ensembl
Mir-154-P28 chr8: 69273238-69273297 [+] UCSC Ensembl
Mir-154-P9 chr8: 69274990-69275052 [+] UCSC Ensembl
Mir-154-P17 chr8: 69275495-69275554 [+] UCSC Ensembl
Mir-154-P21 chr8: 69276318-69276381 [+] UCSC Ensembl
Mir-154-P27 chr8: 69276881-69276939 [+] UCSC Ensembl
Mir-544-P1 chr8: 69277674-69277731 [+] UCSC Ensembl
Mir-154-P16 chr8: 69281090-69281147 [+] UCSC Ensembl
Mir-154-P10 chr8: 69283122-69283179 [+] UCSC Ensembl
Mir-134 chr8: 69283503-69283563 [+] UCSC Ensembl
Mir-154-P15 chr8: 69284239-69284297 [+] UCSC Ensembl
Mir-154-P20 chr8: 69289429-69289482 [+] UCSC Ensembl
Mir-154-P6 chr8: 69290943-69291002 [+] UCSC Ensembl
Mir-154-P36 chr8: 69293782-69293835 [+] UCSC Ensembl
Mir-154-P5 chr8: 69294073-69294128 [+] UCSC Ensembl
Mir-154-P12 chr8: 69294377-69294432 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCCCGAGCCUCUCCAUGGUACUCGGGGAGAGGUUACCCGAGCAACUUUGCAUCUGGACGACGAAUGUUGCUCGUUGAACCCCUUUUCGGUAUCAAAUGCCACCAGAGAGGCGG
Get precursor sequence
Structure
        10           20        30        40         50      
CGCCCGAGCCUCUCCAU---|    U  GG   A    ACC        -    CAUCU 
                    GGUAC CG  GAG GGUU   CGAGCAAC UUUG     \
                    CUAUG GC  UUC CCAA   GCUCGUUG AAGC     G
GGCGGAGAGACCACCGUAAA^    -  UU   C    GUU        U    AGCAG 
  110       100        90         80        70        60
Deep sequencing
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CommentThis gene was classified as a non-canonical miRNA in Fromm et al. (2015) given that the Dicer cut is consistently +4 but the Drosha cut is +2 and reads are abrogated with the Drosha knock-out and hence it is accepted here.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-154-P36_5p

mirBase accessionNone
Sequence
0- AGGUUACCCGAGCAACUUUGCAU -23
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Star sequence

Cfa-Mir-154-P36_3p*

mirBase accessionMIMAT0006726
Sequence
32- GAAUGUUGCUCGUUGAACCCCU -54
Get sequence
Proposed targets TargetScanVert: cfa-miR-409
miRDB: MIMAT0006726