MirGeneDB

MirGeneDB ID

Cbr-Mir-124-P16

Family name MIR-124 (all species)
Seed AAGGCAC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-124c
Paralogues Cbr-Mir-124-P14  Cbr-Mir-124-P15 
Orthologues Aae-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spu-Mir-124  Tca-Mir-124 
Node of Origin (locus) C. briggsae
Node of Origin (family) Bilateria
Genome context
(CB4)
X: 1609141-1609202 [-] Ensembl
Clustered MiRNAs
(< 10kb from Mir-124-P16)
Mir-124-P15 X: 1605243-1605305 [-] Ensembl
Mir-124-P16 X: 1609141-1609202 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAUAUUUUCUCAUCGUUGCUUAGUGUGCACGGCAUUGGCAGUGACCUUAAUAGAGAACAGUCAACUCAUUAAGGCACUUCCAAGCCGUACACAAACAUUGCAACGCAAAUUAUGUCUUUG
Get precursor sequence
Structure
        10        20          30        40        50        60 
UGAAUAUUUUCUCAUCGU   UUAG--|   C     A    C    A       AGAGAAC 
                  UGC      UGUG ACGGC UUGG AGUG CCUUAAU       A
                  ACG      ACAC UGCCG AACC UCAC GGAAUUA       G
GUUUCUGUAUUAAACGCA   UUACAA^   A     -    U    -       CUCAACU 
120       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-124-P16_5p*

MirBase accessionNone
Sequence
0- ACGGCAUUGGCAGUGACCUUAAU -23
Get sequence
Mature sequence

Cbr-Mir-124-P16_3p

MirBase accessionMIMAT0029608
Sequence
41- UAAGGCACUUCCAAGCCGUAC -62
Get sequence