MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-362-P1

Family name MIR-362 (all species)
Seed AUCCUUG
Species Cow (Bos taurus)
MiRBase ID bta-mir-362
Paralogues Bta-Mir-362-P2-v1  Bta-Mir-362-P2-v2  Bta-Mir-362-P2-v3  Bta-Mir-362-P4  Bta-Mir-362-P5  Bta-Mir-362-P6 
Orthologues Cfa-Mir-362-P1  Cpo-Mir-362-P1  Dno-Mir-362-P1  Ete-Mir-362-P1  Hsa-Mir-362-P1  Mml-Mir-362-P1  Mmu-Mir-362-P1  Ocu-Mir-362-P1  Rno-Mir-362-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P1)
Mir-188-P2 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P1 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87732068-87732125 [+] UCSC Ensembl
Mir-362-P2-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P1 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P5 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87742037-87742095 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGAGCCUUCUUGUCUGCUCCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCUGUUCUAGUGCAACACACCUAUUCAAGGAUUCAAAGAGGCUGAGCCUGGUCUACGUGGAGAAG
Get precursor sequence
Structure
        10         20         30        40        50        60 
CCUGAGCCUUCUUGUCU-    CC     C-|          ACC        AG   UGUU 
                  GCUC  CCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG  GGAGA  CUUAGGAACUU   AUCCACAC  ACG    C
GAAGAGGUGCAUCUGGUC    UC     AA^          ---        A-   UGAU 
       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-362-P1_5p

mirBase accessionMIMAT0009298
Sequence
0- AAUCCUUGGAACCUAGGUGUGAGUGC -26
Get sequence
Proposed targets TargetScanVert: bta-miR-362-5p
Co-mature sequence

Bta-Mir-362-P1_3p

mirBase accessionMIMAT0012548
Sequence
37- AACACACCUAUUCAAGGAUUCA -59
Get sequence
Proposed targets TargetScanVert: bta-miR-362-3p