MirGeneDB

MirGeneDB ID

Bta-Mir-23-P1

Family name MIR-23 (all species)
Seed UCACAUU
Species Cow (Bos taurus)
MiRBase ID bta-mir-23a
Paralogues Bta-Mir-23-P2 
Orthologues Aca-Mir-23-P1  Ami-Mir-23-P1  Cfa-Mir-23-P1  Cpi-Mir-23-P1  Cpo-Mir-23-P1  Dno-Mir-23-P1  Dre-Mir-23-P1  Ete-Mir-23-P1  Hsa-Mir-23-P1  Mdo-Mir-23-P1  Mml-Mir-23-P1  Mmu-Mir-23-P1  Oan-Mir-23-P1  Rno-Mir-23-P1  Sha-Mir-23-P1  Sto-Mir-23-o1  Sto-Mir-23-P1  Xtr-Mir-23-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(bosTau8)
chr7: 12981977-12982034 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-23-P1)
Mir-24-P1 chr7: 12981643-12981702 [-] UCSC Ensembl
Mir-27-P1 chr7: 12981795-12981855 [-] UCSC Ensembl
Mir-23-P1 chr7: 12981977-12982034 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCCUUGACCCUGGUGCCAUGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUGCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGAGCCCUGUCUCCGGGGCCGC
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Structure
        10         20        30         40        50        
UGCCCCUUGACCCUGGUGC-  U  C   C   -|        G    G     GCUGC 
                    CA GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                    GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
CGCCGGGGCCUCUGUCCCGA  C  A   A   U^        G    A     CACUG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-23-P1_5p*

MirBase accessionNone
Sequence
0- GGGGUUCCUGGGGAUGGGAUUU -22
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Mature sequence

Bta-Mir-23-P1_3p

MirBase accessionMIMAT0003827
Sequence
36- AUCACAUUGCCAGGGAUUUCCA -58
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Validated targets TargetScanVert: bta-miR-23a