| MirGeneDB ID | Bpl-Novel-6 |
|---|
| Family name |
BPL-NOVEL-6 (all species) |
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| Seed |
AUCUGAC |
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| Species |
Rotifer (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. plicatilis
|
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| Node of Origin (family) |
B. plicatilis
|
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Genome context
(Bpl_ASM1027981) |
QEOQ01000487.1: 32950-33015 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAUUUAGCAAUUUGAAUUGAAUUCAUUUUACGUGUCUACUUCUAGUCAGAUGCAUUGAUUAAAACCGAAUUUGUAUCUGACAAGUAGCCAUGUGGAUUUGGUCAAUUAAAACUUCAAUAAAUGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCAUUUAGCAAUUUGAA---| AUUCAU U CUA UUGAUUAA
UUGA UUUACGUG CUACUU GUCAGAUGCA \
AACU AGGUGUAC GAUGAA CAGUCUAUGU A
AUGUAAAUAACUUCAAAAUU^ GGUUU- C --- UUAAGCCA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bpl-Novel-6_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACGUGUCUACUUCUAGUCAGAUGCA -25
Get sequence
|
|---|
| Mature sequence |
Bpl-Novel-6_3p |
| mirBase accession | None |
|---|
| Sequence |
44- UAUCUGACAAGUAGCCAUGUGG -66
Get sequence
|
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