| MirGeneDB ID | Bpl-Novel-2 |
|---|
| Family name |
BPL-NOVEL-2 (all species) |
|---|
| Seed |
UGCACAA |
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| Species |
Rotifer (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. plicatilis
|
|---|
| Node of Origin (family) |
B. plicatilis
|
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Genome context
(Bpl_ASM1027981) |
QEOQ01000070.1: 152998-153059 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUUAAAAUCACAUUCCAAAACCAAAUUUUAUUGCACAAUCUACAUUGGACCUUAGUUUGACAGGACAGGUCUCUUGUACAUUUGUGCAGGUAAAAUUUUGACUGAAGCUCGUCCAUCAAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUAAAAUCACAUUCCAAAACC-- - UC-| UU UAGUUU
AAAUUUUA UUGCACAA UACA GGACCU G
UUUAAAAU GACGUGUU AUGU UCUGGA A
AUAAACUACCUGCUCGAAGUCAGU G UAC^ UC CAGGAC
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bpl-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUGCACAAUCUACAUUGGACCU -22
Get sequence
|
|---|
| Star sequence |
Bpl-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- GUCUCUUGUACAUUUGUGCAGGUA -62
Get sequence
|
|---|
