MirGeneDB ID | Bpl-Mir-36-P19 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
Bpl-Mir-36-P17
Bpl-Mir-36-P18
|
Orthologues |
Bge-Mir-36
Cbr-Mir-36-o19
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Tca-Mir-36
|
Node of Origin (locus) |
B. plicatilis
|
Node of Origin (family) |
Protostomia
|
Genome context (Bpl_ASM1027981) |
QEOQ01000180.1: 141350-141410 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUAUGUCUGUUGAGUCUUGGUGCUCGUUGAGCAAGUGUAGCUUGUGUUAUGUGGUUCUGUAAUUCAUCACCGGGUUUUCACACUUGCCAAACGACAUCAUGCCUUGUCAANNNNNNNNNN
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUAUGUCUGUUGAGUCU--- C GA ---| U U UGGUUC
UGGUG UCGUU GCAAGUGU AGCUUG GU AUG \
ACUAC AGCAA CGUUCACA UUGGGC CA UAC U
NNNNNNNNNNAACUGUUCCGU - AC CUU^ - C UUAAUG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Bpl-Mir-36-P19_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGCAAGUGUAGCUUGUGUUAUG -22
Get sequence
|
Mature sequence |
Bpl-Mir-36-P19_3p |
mirBase accession | None |
Sequence |
37- UCACCGGGUUUUCACACUUGCCAA -61
Get sequence
|