| MirGeneDB ID | Bla-Novel-6-P4 |
|---|
| Family name |
BRA-NOVEL-6 (all species) |
|---|
| Seed |
GGCCUAA |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
|---|
| Paralogues |
Bla-Novel-6-P1
Bla-Novel-6-P2a
Bla-Novel-6-P2b
Bla-Novel-6-P3
Bla-Novel-6-P5
|
|---|
| Orthologues |
Bfl-Novel-6
|
|---|
| Node of Origin (locus) |
B. lanceolatum
|
|---|
| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000025: 2401442-2401501 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUUAGACAGAAAUCUGGGUUACUACAUGAAUCCGUGGUGAUUACGGCCAUGUUGUUAAUCAGGUCUCAUGGCCUAAUUUCCUCGGAUUUCUGUUGAAACUUUUGUCAACAACAUUCUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUUAGACAGAAAUCUG--| ACU U U U C UUGUUAA
GGUU ACA GAAUCCG GG GAUUA GGCCAUG \
UCAA UGU UUUAGGC CC UUAAU CCGGUAC U
AAUCUUACAACAACUGUUU^ AGU C U U - UCUGGAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Bla-Novel-6-P4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUCCGUGGUGAUUACGGCCAUG -22
Get sequence
|
|---|
| Mature sequence |
Bla-Novel-6-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGGCCUAAUUUCCUCGGAUUU -60
Get sequence
|
|---|
