MirGeneDB 2.1

MirGeneDB ID

Bla-Novel-6-P2a

Family name BRA-NOVEL-6 (all species)
Seed GGCCUAG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Novel-6-P1  Bla-Novel-6-P2b  Bla-Novel-6-P3  Bla-Novel-6-P4  Bla-Novel-6-P5 
Orthologues Bfl-Novel-6 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000025: 2400930-2400989 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUACGAGAGAAAUCUGGGUUACUACAUGAAUCCGUGGUGAUUAUGGCCAUGUUGUUUAUCAGGUCUCAUGGCCUAGUUUCCUCGGAUUCCUGUUGAACCUUUCGUCAGCGACAUCGAUU
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Structure
        10           20        30        40        50          
CAUACGAGAGAAAUCUG---|   ACU   U       U  U     U       UUGUUUA 
                    GGUU   ACA GAAUCCG GG GAUUA GGCCAUG       \
                    CCAA   UGU CUUAGGC CC UUGAU CCGGUAC       U
UUAGCUACAGCGACUGCUUU^   GU-   C       U  U     -       UCUGGAC 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Em Em Em Em
Star sequence

Bla-Novel-6-P2a_5p*

mirBase accessionNone
Sequence
0- AUCCGUGGUGAUUAUGGCCAUG -22
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Mature sequence

Bla-Novel-6-P2a_3p

mirBase accessionNone
Sequence
39- UGGCCUAGUUUCCUCGGAUUC -60
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