| MirGeneDB ID | Bla-Novel-6-P1 |
|---|
| Family name |
BRA-NOVEL-6 (all species) |
|---|
| Seed |
UCCGUGG |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
|---|
| Paralogues |
Bla-Novel-6-P2a
Bla-Novel-6-P2b
Bla-Novel-6-P3
Bla-Novel-6-P4
Bla-Novel-6-P5
|
|---|
| Orthologues |
Bfl-Novel-6
|
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| Node of Origin (locus) |
B. lanceolatum
|
|---|
| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000025: 2400435-2400490 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAAUCUGACUAGCUAUAGACCACGACAAGAAUCCGUGGUAGUUAUGGCCAUGUUUUAAAGGUUCAUGGUCUAAUUUCCAUGGAUUCCUGUUGGAUCUCUUGCCAACAACAAGAACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAUCUGACUAGCUAUA---| CCA A U U UUUUA
GA CGACA GAAUCCGUGG AGUUA GGCCAUG \
CU GUUGU CUUAGGUACC UUAAU CUGGUAC A
ACAAGAACAACAACCGUUCU^ AG- C U - UUGGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Novel-6-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUCCGUGGUAGUUAUGGCCAUG -22
Get sequence
|
|---|
| Star sequence |
Bla-Novel-6-P1_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- UGGUCUAAUUUCCAUGGAUUC -56
Get sequence
|
|---|
