MirGeneDB ID | Bge-Mir-2-P4c-v1 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Bge-Mir-2-P2
Bge-Mir-2-P3
Bge-Mir-2-P4c-v2
Bge-Mir-2-P4d-v1
Bge-Mir-2-P4d-v2
Bge-Mir-2-P7
|
Orthologues |
Aae-Mir-2-P4-v1
Aae-Mir-2-P4-v2
Cbr-Mir-2-o4
Cel-Mir-2-o4
Dma-Mir-2-P4
Dpu-Mir-2-P4
Hme-Mir-2-P4
Isc-Mir-2-P4
Tca-Mir-2-P4-v1
Tca-Mir-2-P4-v2
|
Node of Origin (locus) |
B. germanica
|
Node of Origin (family) |
Protostomia
|
Genome context (Bger_2.0) |
KZ615436.1: 353745-353804 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GAAACCAAACAUAAACUGCUUGGUGUGCUGCUCACAAAGCUGUUGUGAUGUGUCGAUUUGAGUUCAUAUCACAGCCAGCUUUGAUGAGCGGCACACUAAGAUGAACUACAGAACUUCAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAACCAAACAUAAACUG-- - -| UCGAU
CUUGGUGUGCUGCUCA CAAAGCU GUUGUGAUGUG U
GAAUCACACGGCGAGU GUUUCGA CGACACUAUAC U
CAACUUCAAGACAUCAAGUA A C^ UUGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Star sequence |
Bge-Mir-2-P4c-v1_5p* |
mirBase accession | None |
Sequence |
0- CUCACAAAGCUGUUGUGAUGUG -22
Get sequence
|
Mature sequence |
Bge-Mir-2-P4c-v1_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCCAGCUUUGAUGAGCG -60
Get sequence
|