MirGeneDB

MirGeneDB ID

Ami-Mir-205-P1

Family name MIR-205 (all species)
Seed CCUUCAU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-205a
Paralogues Ami-Mir-205-P2 
Orthologues Aca-Mir-205-P1  Bta-Mir-205-P1  Cfa-Mir-205-P1  Cli-Mir-205-P1  Cpi-Mir-205-P1  Cpo-Mir-205-P1  Dno-Mir-205-P1  Dre-Mir-205-P1  Ete-Mir-205-P1  Gga-Mir-205-P1  Hsa-Mir-205-P1  Mdo-Mir-205-P1  Mml-Mir-205-P1  Mmu-Mir-205-P1  Oan-Mir-205-P1  Ocu-Mir-205-P1  Rno-Mir-205-P1  Sha-Mir-205-P1  Sto-Mir-205-P1  Tgu-Mir-205-P1a  Tgu-Mir-205-P1b  Xtr-Mir-205-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(allMis1)
JH737011: 190054-190112 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UGAGUUAAGAAUGAUCCAUGGAUUCUGUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUACCUAAUCAGAUUUCAGUGGAGUGAAGCACAAGAGACAUGGAGUUGAAUCAGCAACGAGAG
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Structure
        10        20          30        40        50         
UGAGUUAAGAAUGAUCCAUGGAU--|  G    C           C        UCUCAU 
                         UCU UUGU CUUCAUUCCAC GGAGUCUG      \
                         AGA AACA GAAGUGAGGUG CUUUAGAC      A
GAGAGCAACGACUAAGUUGAGGUAC^  G    C           A        UAAUCC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-205-P1_5p

MirBase accessionMIMAT0038228
Sequence
0- UCCUUCAUUCCACCGGAGUCUG -22
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Star sequence

Ami-Mir-205-P1_3p*

MirBase accessionMIMAT0038229
Sequence
37- GAUUUCAGUGGAGUGAAGCACA -59
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