MirGeneDB

MirGeneDB ID

Ami-Mir-126-v1

Family name MIR-126 (all species)
Seed AUUAUUA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-126
Paralogues Ami-Mir-126-v2  Ami-Mir-126-v3 
Orthologues Aca-Mir-126-v1  Bta-Mir-126-v1  Cfa-Mir-126-v1  Cin-Mir-126-v1  Cli-Mir-126-v1  Cpi-Mir-126-v1  Cpo-Mir-126-v1  Dno-Mir-126-v1  Ete-Mir-126-v1  Gga-Mir-126-v1  Hsa-Mir-126-v1  Mdo-Mir-126-v1  Mml-Mir-126-v1  Mmu-Mir-126-v1  Oan-Mir-126-v1  Ocu-Mir-126-v1  Rno-Mir-126-v1  Sha-Mir-126-v1  Sto-Mir-126-v1  Tgu-Mir-126-v1  Xtr-Mir-126-v1 
Node of Origin (locus) Olfactores
Node of Origin (family) Olfactores
Genome context
(allMis1)
JH739721: 38065-38123 [-] UCSC
Clustered MiRNAs
(< 10kb from Mir-126-v1)
Mir-126-v1 JH739721: 38065-38123 [-] UCSC
Mir-126-v2 JH739721: 38065-38123 [-] UCSC
Mir-126-v3 JH739721: 38065-38123 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAGGCGCGGCAGGCGAUGCUGGUGACGGCCCAUUAUUACUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGAGUAAUAAUGCGCUGCGGCCAGCACCGGCGACGGACACAGAA
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Structure
        10          20        30        40        50         
GAGGCGCGGCAGGCGAU--|     GA    C           U       CGCUGUGAC 
                   GCUGGU  CGGC CAUUAUUACUU UGGUACG         \
                   CGACCG  GUCG GUAAUAAUGAG GCCAUGC         A
AAGACACAGGCAGCGGCCA^     GC    C           U       UCAAACUUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-126-v1_5p

MirBase accessionMIMAT0038131
Sequence
0- CAUUAUUACUUUUGGUACGCG -21
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Star sequence

Ami-Mir-126-v1_3p*

MirBase accessionMIMAT0038132
Sequence
38- CGUACCGUGAGUAAUAAUGCG -59
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