MirGeneDB

MirGeneDB ID

Aca-Mir-33-P2

Family name MIR-33 (all species)
Seed UGCAUUG
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-33-2
Paralogues Aca-Mir-33-P1 
Orthologues Aae-Mir-33  Ami-Mir-33-P2  Bge-Mir-33  Bta-Mir-33-P2  Cfa-Mir-33-P2  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P2  Cpi-Mir-33-P2  Cpo-Mir-33-P2  Cte-Mir-33  Dan-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P2  Dpu-Mir-33  Dre-Mir-33-P2  Efe-Mir-33  Ete-Mir-33-P2  Gga-Mir-33-P2  Hsa-Mir-33-P2  Isc-Mir-33  Lgi-Mir-33  Mml-Mir-33-P2  Oan-Mir-33-P2  Ocu-Mir-33-P2  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Spu-Mir-33  Sto-Mir-33-P2  Tca-Mir-33  Xtr-Mir-33-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
GL343500.1: 19241-19299 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAUCGGAGCUCAAGUGGCAGUUUCGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGGCCAAGCUGUGCAAUGCCCCUCCAGUGCAGCCCUGAGGCCGUCCUCUACCAGCAGACAAUCA
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Structure
        10          20        30        40        50         
UGCAUCGGAGCUCAAGU--|  A         G       U  UU        UGUGUGG 
                   GGC GUUUCGGGG UGCAUUG AG  GCAUUGCA       \
                   CUG CGGAGUCCC ACGUGAC UC  CGUAACGU       C
ACUAACAGACGACCAUCUC^  C         G       C  CC        GUCGAAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-33-P2_5p

MirBase accessionMIMAT0021934
Sequence
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Aca-Mir-33-P2_3p*

MirBase accessionMIMAT0021936
Sequence
38- CAAUGCCCCUCCAGUGCAGCC -59
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