MirGeneDB

MirGeneDB ID

Aca-Mir-29-P1b

Family name MIR-29 (all species)
Seed AGCACCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-29a-2
Paralogues Aca-Mir-29-P1a  Aca-Mir-29-P2a  Aca-Mir-29-P2b-v1  Aca-Mir-29-P2b-v2 
Orthologues Ami-Mir-29-P1b  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bta-Mir-29-P1b  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b3  Cfa-Mir-29-P1b4  Cgi-Mir-29-P1  Cin-Mir-29-P1  Cli-Mir-29-P1b  Cpi-Mir-29-P1b  Cpo-Mir-29-P1b  Cte-Mir-29-P1  Dno-Mir-29-P1b  Ete-Mir-29-P1b  Gga-Mir-29-P1b  Hsa-Mir-29-P1b  Isc-Mir-29-P1  Lgi-Mir-29-P1  Mdo-Mir-29-P1b  Mml-Mir-29-P1b  Mmu-Mir-29-P1b  Oan-Mir-29-P1b  Ocu-Mir-29-P1b  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1b1  Rno-Mir-29-P1b2  Sha-Mir-29-P1b  Sko-Mir-29-P1  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tgu-Mir-29-P1b  Xtr-Mir-29-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
GL343255.1: 1943488-1943547 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-29-P1b)
Mir-29-P2b-v1 GL343255.1: 1940196-1940259 [+] UCSC Ensembl
Mir-29-P2b-v2 GL343255.1: 1940197-1940258 [+] UCSC Ensembl
Mir-29-P1b GL343255.1: 1943488-1943547 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAACUGUGAAAACGUCUCUUACACAGGCUGACCGAUUUCUCUUGGUGUUCAGAGUCUUAGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAACUACAGUGGA
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Structure
        10            20         30        40        50          
GAACUGUGAAAACGUCU----      -| GGC           UCU       C   GUCUUA 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU      G
AGGUGACAUCAACGAAAAGGG      A^ ---           UUU       -   GUUUUU 
.       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-29-P1b_5p*

MirBase accessionMIMAT0021913
Sequence
0- ACCGAUUUCUCUUGGUGUUCAGA -23
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Mature sequence

Aca-Mir-29-P1b_3p

MirBase accessionMIMAT0021912
Sequence
38- UAGCACCAUUUGAAAUCGGUUA -60
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