MirGeneDB

MirGeneDB ID

Aca-Mir-29-P1a

Family name MIR-29 (all species)
Seed AGCACCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-29a-1
Paralogues Aca-Mir-29-P1b  Aca-Mir-29-P2a  Aca-Mir-29-P2b-v1  Aca-Mir-29-P2b-v2 
Orthologues Ami-Mir-29-P1a  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bta-Mir-29-P1a  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1a  Cgi-Mir-29-P1  Cin-Mir-29-P1  Cli-Mir-29-P1a  Cpi-Mir-29-P1a  Cpo-Mir-29-P1a  Cte-Mir-29-P1  Dno-Mir-29-P1a  Dre-Mir-29-P1a  Ete-Mir-29-P1a  Gga-Mir-29-P1a  Hsa-Mir-29-P1a  Isc-Mir-29-P1  Lgi-Mir-29-P1  Mdo-Mir-29-P1a  Mml-Mir-29-P1a  Mmu-Mir-29-P1a  Oan-Mir-29-P1a  Ocu-Mir-29-P1a  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1a  Sha-Mir-29-P1a  Sko-Mir-29-P1  Spu-Mir-29-P1  Sto-Mir-29-P1a  Tgu-Mir-29-P1a  Xtr-Mir-29-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
5: 1036151-1036210 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-29-P1a)
Mir-29-P1a 5: 1036151-1036210 [-] UCSC Ensembl
Mir-29-P2a 5: 1037468-1037531 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUAGAGUCCGGUCACCCCUUUAAAGGAUGACUGAUUUCUUCUGGUGUUCGGAGUCUAGUUCUCUUUCUAGCACCAUUUGAAAUCGGUUAUAGUGAUUGGGGAAUAUCACCAUGGAAGCA
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Structure
        10          20        30        40        50         
CGUAGAGUCCGGUCACC--|  UUAAAGG            UUC       C   GUCUA 
                   CCU       AUGACUGAUUUC   UGGUGUU GGA     G
                   GGG       UAUUGGCUAAAG   ACCACGA CUU     U
ACGAAGGUACCACUAUAAG^  UUAGUGA            UUU       U   UCUCU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-29-P1a_5p*

MirBase accessionMIMAT0021911
Sequence
0- ACUGAUUUCUUCUGGUGUUCGGA -23
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Mature sequence

Aca-Mir-29-P1a_3p

MirBase accessionMIMAT0021912
Sequence
38- UAGCACCAUUUGAAAUCGGUUA -60
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